辦公廳Department of General Administration

綜合處 General Office (Division of Security)
 
秘書一處 Division I of Secretariat
 
秘書二處 Division II of Secretariat
 
文書檔案處 Division of Documentation and Archives
 
新聞宣傳辦公室 Information Office
 
信訪處 Division of Complaints and Appeal
 
人事司Department of Human Resources

辦公室 General Office
 
干部處 Division of Personnel
 
專業人才管理處 Division of Health Professionals Management
 
勞動工資處 Division of Labor and Salary
 
規劃財務司Department of Planning and Finance

辦公室 General Office
 
規劃與價格處 Division of Planning and Pricing
 
財務與資產處 Division of Finance and Property
 
基建裝備處 Division of Capital Construction and Equipment
 
機關財務處 Division of Accounting
 
審計處 Division of Auditing

衛生政策法規司Department of Health Policy and Regulation

綜合處（衛生部WTO相關事務辦公室） General Office (Division of Affairs on WTO)
 
法規處 Division of Health Regulation
 
政策研究一處 Division I of Policy Research
 
政策研究二處 Division II of Policy Research
 
衛生應急辦公室（突發公共衛生事件應急指揮中心）Office of Health Emergency (Center for Public Health Emergency)

綜合協調處 General Office
 
預測預警處 Division of Precaution
 
應急指導處 Division of Emergency Preparedness
 
應急處理處 Division of Emergency Response
 
農村衛生管理司Department of Rural Health Management

綜合處 General Office
 
初級衛生保健處 Division of Primary Health Care
 
合作醫療處 Division of Rural Cooperative Medical Scheme
 
衛生服務規劃管理處 Division of Rural Health Service Planning and Management
 
衛生執法監督司Department of Health Law Enforcement and Supervision

綜合處 General Office
 
醫政監督處 Division of Medical Service Supervision
 
公共衛生監督處 Division of Public Health Supervision
 
食品化妝品衛生監督管理處 Division of Food and Cosmetic Hygiene Supervision
 
婦幼保健與社區衛生司Department of Maternal and Child Health Care and Community Health

綜合處 General Office
 
社區衛生處 Division of Community Health Care
 
婦女衛生處 Division of Women’s Health
 
兒童衛生處 Division of Children’s Health
 
健康促進與教育處 Division of Health Promotion and Education
 
醫政司Department of Medical Administration

綜合處 General Office
 
醫療機構管理處 Division of Medical Institution Management
 
醫療服務管理處 Division of Medical Service Management
 
血液管理處 Division of Blood Management
 
護理處 Division of Nursing#p#分頁標題#e#
 
疾病控制司（全國愛國衛生運動委員會辦公室）Department of Disease Control (Office of the National Patriotic Health Campaign Committee)

綜合處General Office
 
傳染病預防控制管理處 Division of Communicable Disease Prevention and Management
 
艾滋病預防控制管理處 Division of AIDS Prevention and Management
 
免疫規劃管理處 Division of Immunization Planning and Management
 
血吸蟲病防治管理處 Division of Schistosomiasis Prevention and Management
 
農村改水、環境衛生與地方病處 Division Of Rural Water Supply, Environment Sanitation and Endemic Disease Control
 
非傳染病預防控制管理處 Division of Non-communicable Disease Control and Management
 
愛國衛生監督檢查處 Division of Patriotic Health Supervision and Inspection
 
科技教育司Department of Medical Science, Technology and Education

綜合處 General Office
 
規劃處 Division of Planning
 
技術評估與推廣處 Division of Technology Evaluation and Promotion
 
認證認可與實驗室管理處 Division of License and Laboratory Management
 
教育處 Division of Education
 
國際合作司（衛生部臺港澳事務辦公室）Department of International Cooperation（Office of Taiwan, Hong Kong & Macao Affairs）

綜合處 General Office
 
國際組織處 Division of International Organizations
 
歐美大處 Division of European , American and Oceanian Affairs
 
亞非處（援外處） Division of Asian and African Affairs （Division of Medical Aid to Developing Countries）
 
臺港澳處 Division of Taiwan, Hong Kong and Macao Affairs
 
保健局Bureau of Health Care for Senior Officials

辦公室 General Office
 
保健處 Division of Health Care
 
醫療處 Division of Medical Care
 
預防與健康教育處 Division of Disease Prevention and Health Education

直屬機關黨委Committee of the Communist Party of China at Ministry of Health

辦公室 （宣傳處）General Office (Division of Advocacy)
 
組織處（統戰處） Division of Organization (Division of United Fronts)
 
工會（團委） Labor Union Office (Youth League Committee)

離退休干部局Bureau of the Retired Personnel

辦公室  General Office
 
組織活動處 Division of Activities
 
生活福利處 Division of Welfare
 
服務處 Division of Service